Plot an ONA set

Creates a qeviz::qe_plot() for an ordered set. The plot starts empty: add the mean network with edges(), the code nodes with nodes() and the unit points with units(). Any qeviz chain function can be used on the result too, for example qe_edges("FirstGame", compare = "SecondGame").

Usage

# S3 method for class 'ena.ordered.set'
plot(
  x,
  y,
  ...,
  dimensions = NULL,
  group_col = NULL,
  scale_points = FALSE,
  legacy = FALSE,
  max_axis_marker = 3
)

Arguments

x: An ena.ordered.set from model().
y: Ignored (present for the plot() generic).
...: Passed to qeviz::qe_plot() (e.g. title, width, height, range).
dimensions: The two dimensions to plot, by name (e.g. c("SVD2", "SVD3")). Default: the first two.
group_col: Metadata column that groups the units, used for qeviz's group means and qe_edges(group =). Default: "Condition" when the set has that column, otherwise none.
scale_points: Whether qeviz rescales the points to the extent of the nodes. Default FALSE: ONA's node positions are already fitted to the points, so both are drawn as they are in the set.
legacy: Draw the plot the way ONA 0.1 did: axes fixed at c(-max_axis_marker, max_axis_marker) with the axis cross shown, and edge widths and node sizes in data units (a weight of 1 is as wide as one unit of the axes). Default FALSE: qeviz fits the axes to the plot and draws a weight of 1 as 4% of the plot width. Use it to keep figures comparable with ones made before plotting moved to qeviz.
max_axis_marker: Half the axis range when legacy = TRUE.

Value

An object of classes enaplot and qe_plot.

Usage

Arguments

Value

See also